Swapping the fuse fixed the problem, but unfortunately for me, I cut a few of the wires during the "troubleshooting", and had to re-solder them up before I buttoned the whole thing back up. I'm sorry I doubted the little PWM controller too, it was running like a champ, just like the one I put in my Bento Box clone filter (which has been running for well over a year off and on when I run prints). Troubleshooting things did give me a few ideas to make it much easier to work on though, which would be implemented in any future designs for these types of filters.
I also discovered that the filter was definitely working, since the inside was dusty as heck (I stupidly set it up to pull dirty air in and exhaust clean air, vs the opposite - and smarter way of setting these filters up).
I had thought the CR filter project was sort'a a bust, but now I'm reconsidering if it may actually be a success given how much dust was apparently stuck in the filters. I guess every cloud of dust has a silver lining.

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